PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g026150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 311aa    MW: 33453.1 Da    PI: 8.2205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g026150.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069138160123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+++F++   L  H  +H
  Sopen11g026150.1 138 YECKTCNRTFNSFQALGGHRASH 160
                       99**********99999998887 PP

2zf-C2H213.60.0002229251123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  Fs+   L  H+r+H
  Sopen11g026150.1 229 HECSICGSEFSSGQALGGHMRRH 251
                       78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.6E-13137162IPR007087Zinc finger, C2H2
SuperFamilySSF576677.34E-9137160No hitNo description
SMARTSM003550.065138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907138165IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576677.34E-9224251No hitNo description
SMARTSM003550.02229251IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-12229253IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951229256IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEVCQNFSER RSCAFKGKRT KRSRPLSPLN TAGTTTTTTT ITTTTTSSSI ACGSNDGSRG  60
VDGGGGDFFY NSPTTSTTQI SRLSTSEEDE DMANCLILLA QSGCGHKVEQ VKKEKINNRK  120
FAEIANSSTT GKAGFFVYEC KTCNRTFNSF QALGGHRASH KKPKTILEDK KSVTVNTDST  180
ATATATATAT ATAGAGDGAG HDNLHDQGQE RLNKISNTTI QSNIKTKIHE CSICGSEFSS  240
GQALGGHMRR HRQPPTTTMI NASNVSESSH DEKSRRTVLC LDLNLPAPVE DDHKFEQSLV  300
FSAAPLVDCY Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057800.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLK4D9P80.0K4D9P8_SOLLC; Uncharacterized protein
STRINGSolyc11g066400.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-49C2H2 family protein